Spliced read mapper for RNA-Seq data
TopHat is a fast splice junction mapper for nucleotide sequence reads produced by the RNA-Seq method. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.
| System | Target | Derivation | Build status |
|---|---|---|---|
| x86_64-linux | /gnu/store/v7m5gb8yh9sz2ayqq27ghwhqcfbkq9mn-tophat-2.1.1.drv | ||
| x86_64-linux | x86_64-w64-mingw32 | /gnu/store/5ix5wsimkkg6q4zlrsxa4qklxv2dqkgs-tophat-2.1.1.drv | |
| x86_64-linux | riscv64-linux-gnu | /gnu/store/3nqck763awbrlpckajcgvp2czfzij5sg-tophat-2.1.1.drv | |
| x86_64-linux | powerpc-linux-gnu | /gnu/store/pp17r9g3s0pc04bigbmnnwxx69h4is9q-tophat-2.1.1.drv | |
| x86_64-linux | powerpc64le-linux-gnu | /gnu/store/6phpklnq1909xn2d5wlk4y0y608zck26-tophat-2.1.1.drv | |
| x86_64-linux | mips64el-linux-gnu | /gnu/store/fcigrj9d8b72ipgc7lhsqskdkyp5qcap-tophat-2.1.1.drv | |
| x86_64-linux | i686-w64-mingw32 | /gnu/store/0fcll9mfbjpp45sjyihxmk463lk4y9pm-tophat-2.1.1.drv | |
| x86_64-linux | i586-pc-gnu | /gnu/store/5l4rldslzmd9l820vz8qm79iq8gnkbfc-tophat-2.1.1.drv | |
| x86_64-linux | arm-linux-gnueabihf | /gnu/store/iqm89w8v1zwj5i6aabbxxsflcll6zrc3-tophat-2.1.1.drv | |
| x86_64-linux | aarch64-linux-gnu | /gnu/store/xalk17lrd3hybij5fcd14y316hqqmj0k-tophat-2.1.1.drv |
| Linter | Message | Location |
|---|---|---|
| input-labels Identify input labels that do not match package names | label 'gcc@5' does not match package name 'gcc' | |
| input-labels Identify input labels that do not match package names | label 'python' does not match package name 'python2' | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7487 7f8ed7409c60> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7487 7fa7aa068c60> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7487 7f5755cb9c60> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7487 7f119da52c60> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7492 7fb2d2987dc0> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7492 7f3e6bc77dc0> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7492 7f62abeb7dc0> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7492 7fa23c1dddc0> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7492 7f0f10522dc0> input: ("_" "static")> |