Graph-based alignment of genomic sequencing reads
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as to a single reference genome). In addition to using one global graph FM (GFM) index that represents a population of human genomes, HISAT2 uses a large set of small GFM indexes that collectively cover the whole genome. These small indexes, combined with several alignment strategies, enable rapid and accurate alignment of sequencing reads. This new indexing scheme is called a Hierarchical Graph FM index (HGFM).
| System | Target | Derivation | Build status |
|---|---|---|---|
| x86_64-linux | /gnu/store/4vjcwa96b0ywd3k5sck14826dr4aw3k8-hisat2-2.2.1.drv | ||
| x86_64-linux | x86_64-w64-mingw32 | /gnu/store/an6494fkhiac3xzx4ygczfnsfhlgwzk4-hisat2-2.2.1.drv | |
| x86_64-linux | riscv64-linux-gnu | /gnu/store/mcjgycppiv4dd1ykrkcngpq9l0xibrmq-hisat2-2.2.1.drv | |
| x86_64-linux | powerpc-linux-gnu | /gnu/store/j3wy2fxbkig897371m509jbr0pmq3p0j-hisat2-2.2.1.drv | |
| x86_64-linux | powerpc64le-linux-gnu | /gnu/store/99c1g9354d4gvygj18g2kbm4pyd551fy-hisat2-2.2.1.drv | |
| x86_64-linux | mips64el-linux-gnu | /gnu/store/6mdhhn3a7k5zqhp28qdznfl8v4lsrlia-hisat2-2.2.1.drv | |
| x86_64-linux | i686-w64-mingw32 | /gnu/store/jvdxj1mc4s5kmjhy85am81405fvw4grw-hisat2-2.2.1.drv | |
| x86_64-linux | i586-pc-gnu | /gnu/store/02scvdnvw8i2q5qhxg37lb40sld49rnj-hisat2-2.2.1.drv | |
| x86_64-linux | arm-linux-gnueabihf | /gnu/store/2fzariwks3gp4fm1w72sqpq2y2n90ya5-hisat2-2.2.1.drv | |
| x86_64-linux | aarch64-linux-gnu | /gnu/store/5ij0iq5szpa574f31cp83a2wm8jswgcr-hisat2-2.2.1.drv | |
| i686-linux | /gnu/store/pnz706y8gd2ggbmahlqhny2x4v9zyabl-hisat2-2.2.1.drv |
| Linter | Message | Location |
|---|---|---|
| input-labels Identify input labels that do not match package names | label 'python' does not match package name 'python-wrapper' | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7487 7f8ed7409c60> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7487 7fa7aa068c60> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7487 7f5755cb9c60> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7487 7f119da52c60> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7492 7fb2d2987dc0> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7492 7f3e6bc77dc0> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7492 7f62abeb7dc0> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7492 7fa23c1dddc0> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7492 7f0f10522dc0> input: ("_" "static")> |