Process mapped Hi-C data
Pairtools is a simple and fast command-line framework to process sequencing data from a Hi-C experiment. Process pair-end sequence alignments and perform the following operations:
detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end sequences of Hi-C DNA molecules
sort .pairs files for downstream analyses
detect, tag and remove PCR/optical duplicates
generate extensive statistics of Hi-C datasets
select Hi-C pairs given flexibly defined criteria
restore .sam alignments from Hi-C pairs.
| Linter | Message | Location |
|---|---|---|
| input-labels Identify input labels that do not match package names | label 'python' does not match package name 'python-wrapper' | |
| optional-tests Make sure tests are only run when requested | the 'check' phase should respect #:tests? | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7487 7f8ed7409c60> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7487 7fa7aa068c60> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7487 7f5755cb9c60> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7487 7f119da52c60> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7492 7fb2d2987dc0> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7492 7f3e6bc77dc0> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7492 7f62abeb7dc0> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7492 7fa23c1dddc0> input: ("_" "static")> | |
| derivation Report failure to compile a package to a derivation | failed to create i586-gnu derivation: #<&package-input-error package: #<package nghttp2@1.48.0 gnu/packages/web.scm:7492 7f0f10522dc0> input: ("_" "static")> |